Detailed information of SNP:
|
SNP ID:
sf1002880424(Gbrowse)
Chromosome: chr10 Position: 2880424 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 79.99% | 20.01% |
| All Indica | 750 | 63.73% | 36.27% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 356 | 68.82% | 31.18% |
| Indica II | 199 | 60.80% | 39.20% |
| Indica Intermediate | 195 | 57.44% | 42.56% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002880424 | G->A | LOC_Os10g05710(LOC_Os10g05710.1) | Synonymous |