Detailed information of SNP:



SNP ID: sf1002905111(Gbrowse)

Chromosome: chr10

Position: 2905111
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 69.58% 30.42%
All Indica797 95.86% 4.14%
All Japonica497 24.14% 75.86%
Aus67 86.57% 13.43%
Indica I374 95.99% 4.01%
Indica II212 96.70% 3.30%
Indica Intermediate211 94.79% 5.21%
Temperate Japonica335 4.18% 95.82%
Tropical Japonica94 91.49% 8.51%
Japonica Intermediate68 29.41% 70.59%
Group VI/Aromatic14 78.57% 21.43%
Intermediate42 78.57% 21.43%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1002905111 T->C LOC_Os10g05770(LOC_Os10g05770.1) INTRON