Detailed information of SNP:
|
SNP ID:
sf1002905111(Gbrowse)
Chromosome: chr10 Position: 2905111 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 69.58% | 30.42% |
| All Indica | 797 | 95.86% | 4.14% |
| All Japonica | 497 | 24.14% | 75.86% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002905111 | T->C | LOC_Os10g05770(LOC_Os10g05770.1) | INTRON |