Detailed information of SNP:
|
SNP ID:
sf1002907114(Gbrowse)
Chromosome: chr10 Position: 2907114 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1363 | 50.40% | 49.60% |
| All Indica | 790 | 44.56% | 55.44% |
| All Japonica | 451 | 64.97% | 35.03% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 370 | 45.95% | 54.05% |
| Indica II | 211 | 36.02% | 63.98% |
| Indica Intermediate | 209 | 50.72% | 49.28% |
| Temperate Japonica | 297 | 83.16% | 16.84% |
| Tropical Japonica | 93 | 7.53% | 92.47% |
| Japonica Intermediate | 61 | 63.93% | 36.07% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002907114 | A->G | LOC_Os10g05770(LOC_Os10g05770.1) | INTRON |