Detailed information of SNP:
|
SNP ID:
sf1002917886(Gbrowse)
Chromosome: chr10 Position: 2917886 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 69.49% | 30.51% |
| All Indica | 797 | 96.61% | 3.39% |
| All Japonica | 496 | 23.39% | 76.61% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002917886 | T->C | INTERGENIC | None |