Detailed information of SNP:
|
SNP ID:
sf1002919413(Gbrowse)
Chromosome: chr10 Position: 2919413 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1322 | 97.50% | 2.50% |
| All Indica | 795 | 100.00% | 0.00% |
| All Japonica | 406 | 92.12% | 7.88% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 260 | 89.23% | 10.77% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 55 | 92.73% | 7.27% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002919413 | C->T | INTERGENIC | None |