Detailed information of SNP:
|
SNP ID:
sf1002939618(Gbrowse)
Chromosome: chr10 Position: 2939618 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 74.12% | 25.88% |
| All Indica | 798 | 80.58% | 19.42% |
| All Japonica | 497 | 71.83% | 28.17% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 212 | 61.79% | 38.21% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002939618 | A->G | INTERGENIC | None |