Detailed information of SNP:
|
SNP ID:
sf1002939956(Gbrowse)
Chromosome: chr10 Position: 2939956 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 53.75% | 46.25% |
| All Indica | 794 | 68.51% | 31.49% |
| All Japonica | 497 | 23.94% | 76.06% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 372 | 65.05% | 34.95% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 209 | 69.86% | 30.14% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002939956 | T->C | INTERGENIC | None |