Detailed information of SNP:
|
SNP ID:
sf1002940097(Gbrowse)
Chromosome: chr10 Position: 2940097 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 60.90% | 39.10% |
| All Indica | 779 | 79.08% | 20.92% |
| All Japonica | 497 | 27.97% | 72.03% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 365 | 75.62% | 24.38% |
| Indica II | 209 | 82.30% | 17.70% |
| Indica Intermediate | 205 | 81.95% | 18.05% |
| Temperate Japonica | 335 | 6.87% | 93.13% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002940097 | T->C | INTERGENIC | None |