Detailed information of SNP:
|
SNP ID:
sf1002940188(Gbrowse)
Chromosome: chr10 Position: 2940188 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 55.21% | 44.79% |
| All Indica | 782 | 71.61% | 28.39% |
| All Japonica | 497 | 23.74% | 76.26% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 366 | 68.03% | 31.97% |
| Indica II | 212 | 75.47% | 24.53% |
| Indica Intermediate | 204 | 74.02% | 25.98% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002940188 | G->A | INTERGENIC | None |