Detailed information of SNP:
|
SNP ID:
sf1002943652(Gbrowse)
Chromosome: chr10 Position: 2943652 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 89.13% | 10.87% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 496 | 76.61% | 23.39% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002943652 | C->T | INTERGENIC | None |