Detailed information of SNP:
|
SNP ID:
sf1002953194(Gbrowse)
Chromosome: chr10 Position: 2953194 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 65.21% | 34.79% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 493 | 7.71% | 92.29% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 90 | 26.67% | 73.33% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002953194 | T->C | INTERGENIC | None |