Detailed information of SNP:
|
SNP ID:
sf1002960217(Gbrowse)
Chromosome: chr10 Position: 2960217 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 70.73% | 29.27% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 497 | 24.14% | 75.86% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002960217 | C->A | INTERGENIC | None |