Detailed information of SNP:
|
SNP ID:
sf1002964598(Gbrowse)
Chromosome: chr10 Position: 2964598 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 90.81% | 9.19% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 492 | 77.85% | 22.15% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 95.51% | 4.49% |
| Tropical Japonica | 90 | 14.44% | 85.56% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002964598 | A->G | LOC_Os10g05870(LOC_Os10g05870.1) | INTRON |