Detailed information of SNP:
|
SNP ID:
sf1002965018(Gbrowse)
Chromosome: chr10 Position: 2965018 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 93.67% | 6.33% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 471 | 84.71% | 15.29% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 331 | 96.37% | 3.63% |
| Tropical Japonica | 76 | 36.84% | 63.16% |
| Japonica Intermediate | 64 | 81.25% | 18.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002965018 | G->A | LOC_Os10g05870(LOC_Os10g05870.1) | Non-Synonymous SNP |