Detailed information of SNP:
|
SNP ID:
sf1002965332(Gbrowse)
Chromosome: chr10 Position: 2965332 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 94.39% | 5.61% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 471 | 85.56% | 14.44% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 96.41% | 3.59% |
| Tropical Japonica | 72 | 37.50% | 62.50% |
| Japonica Intermediate | 65 | 83.08% | 16.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002965332 | A->G | INTERGENIC | None |