Detailed information of SNP:
|
SNP ID:
sf1002972949(Gbrowse)
Chromosome: chr10 Position: 2972949 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 54.20% | 45.80% |
| All Indica | 766 | 21.15% | 78.85% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 360 | 6.11% | 93.89% |
| Indica II | 207 | 45.41% | 54.59% |
| Indica Intermediate | 199 | 23.12% | 76.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002972949 | T->C | INTERGENIC | None |