Detailed information of SNP:
|
SNP ID:
sf1002988098(Gbrowse)
Chromosome: chr10 Position: 2988098 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 91.73% | 8.27% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 493 | 78.70% | 21.30% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 95.81% | 4.19% |
| Tropical Japonica | 92 | 18.48% | 81.52% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1002988098 | G->A | INTERGENIC | None |