Detailed information of SNP:
|
SNP ID:
sf1003003376(Gbrowse)
Chromosome: chr10 Position: 3003376 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 58.22% | 41.78% |
| All Indica | 787 | 91.61% | 8.39% |
| All Japonica | 496 | 4.64% | 95.36% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 372 | 93.28% | 6.72% |
| Indica II | 205 | 90.24% | 9.76% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 334 | 5.09% | 94.91% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003003376 | T->C | INTERGENIC | None |