Detailed information of SNP:
SNP ID:
sf1003004542(Gbrowse)
Chromosome: chr10 Position: 3004542 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1416 | 87.85% | 12.15% |
All Indica | 799 | 98.87% | 1.13% |
All Japonica | 494 | 70.04% | 29.96% |
Aus | 67 | 85.07% | 14.93% |
Indica I | 375 | 99.20% | 0.80% |
Indica II | 213 | 98.12% | 1.88% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 332 | 59.64% | 40.36% |
Tropical Japonica | 94 | 97.87% | 2.13% |
Japonica Intermediate | 68 | 82.35% | 17.65% |
Group VI/Aromatic | 14 | 85.71% | 14.29% |
Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1003004542 | C->T | INTERGENIC | None |