Detailed information of SNP:



SNP ID: sf1003004542(Gbrowse)

Chromosome: chr10

Position: 3004542
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1416 87.85% 12.15%
All Indica799 98.87% 1.13%
All Japonica494 70.04% 29.96%
Aus67 85.07% 14.93%
Indica I375 99.20% 0.80%
Indica II213 98.12% 1.88%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica332 59.64% 40.36%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 82.35% 17.65%
Group VI/Aromatic14 85.71% 14.29%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1003004542 C->T INTERGENIC None