Detailed information of SNP:
|
SNP ID:
sf1003004991(Gbrowse)
Chromosome: chr10 Position: 3004991 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 61.19% | 38.81% |
| All Indica | 782 | 97.95% | 2.05% |
| All Japonica | 491 | 3.87% | 96.13% |
| Aus | 51 | 66.67% | 33.33% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 200 | 97.50% | 2.50% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 331 | 4.53% | 95.47% |
| Tropical Japonica | 92 | 1.09% | 98.91% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003004991 | T->A | INTERGENIC | None |