Detailed information of SNP:
|
SNP ID:
sf1003007410(Gbrowse)
Chromosome: chr10 Position: 3007410 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1169 | 94.44% | 5.56% |
| All Indica | 554 | 95.31% | 4.69% |
| All Japonica | 496 | 96.37% | 3.63% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 235 | 94.47% | 5.53% |
| Indica II | 181 | 97.24% | 2.76% |
| Indica Intermediate | 138 | 94.20% | 5.80% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003007410 | A->T | INTERGENIC | None |