Detailed information of SNP:
|
SNP ID:
sf1003024918(Gbrowse)
Chromosome: chr10 Position: 3024918 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 77.57% | 22.43% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 496 | 40.73% | 59.27% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 54.03% | 45.97% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003024918 | T->G | INTERGENIC | None |