Detailed information of SNP:
|
SNP ID:
sf1003025756(Gbrowse)
Chromosome: chr10 Position: 3025756 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 55.34% | 44.66% |
| All Indica | 796 | 85.80% | 14.20% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 374 | 89.84% | 10.16% |
| Indica II | 211 | 85.31% | 14.69% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003025756 | C->A | INTERGENIC | None |