Detailed information of SNP:
|
SNP ID:
sf1003029147(Gbrowse)
Chromosome: chr10 Position: 3029147 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 76.38% | 23.62% |
| All Indica | 796 | 97.49% | 2.51% |
| All Japonica | 496 | 40.73% | 59.27% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 54.03% | 45.97% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003029147 | A->G | INTERGENIC | None |