Detailed information of SNP:
|
SNP ID:
sf1003041553(Gbrowse)
Chromosome: chr10 Position: 3041553 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 93.94% | 6.06% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003041553 | A->G | INTERGENIC | None |