Detailed information of SNP:
|
SNP ID:
sf1003042896(Gbrowse)
Chromosome: chr10 Position: 3042896 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 62.71% | 37.29% |
| All Indica | 797 | 60.35% | 39.65% |
| All Japonica | 497 | 60.36% | 39.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 58.93% | 41.07% |
| Indica II | 212 | 67.92% | 32.08% |
| Indica Intermediate | 210 | 55.24% | 44.76% |
| Temperate Japonica | 335 | 45.97% | 54.03% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003042896 | A->C | INTERGENIC | None |