Detailed information of SNP:
|
SNP ID:
sf1003046363(Gbrowse)
Chromosome: chr10 Position: 3046363 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 60.34% | 39.66% |
| All Indica | 797 | 41.53% | 58.47% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 42.40% | 57.60% |
| Indica II | 212 | 34.91% | 65.09% |
| Indica Intermediate | 210 | 46.67% | 53.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003046363 | C->T | LOC_Os10g06010(LOC_Os10g06010.1) | INTRON |