Detailed information of SNP:
|
SNP ID:
sf1003058254(Gbrowse)
Chromosome: chr10 Position: 3058254 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1241 | 66.24% | 33.76% |
| All Indica | 770 | 84.81% | 15.19% |
| All Japonica | 355 | 19.15% | 80.85% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 359 | 87.47% | 12.53% |
| Indica II | 206 | 84.95% | 15.05% |
| Indica Intermediate | 205 | 80.00% | 20.00% |
| Temperate Japonica | 205 | 22.93% | 77.07% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 56 | 23.21% | 76.79% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003058254 | C->T | INTERGENIC | None |