Detailed information of SNP:
|
SNP ID:
sf1003062528(Gbrowse)
Chromosome: chr10 Position: 3062528 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 91.18% | 8.82% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 464 | 76.29% | 23.71% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 320 | 92.19% | 7.81% |
| Tropical Japonica | 82 | 25.61% | 74.39% |
| Japonica Intermediate | 62 | 61.29% | 38.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003062528 | G->A | LOC_Os10g06030(LOC_Os10g06030.1) | Synonymous |