Detailed information of SNP:
|
SNP ID:
sf1003067782(Gbrowse)
Chromosome: chr10 Position: 3067782 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 60.13% | 39.87% |
| All Indica | 795 | 39.62% | 60.38% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 373 | 49.06% | 50.94% |
| Indica II | 213 | 27.70% | 72.30% |
| Indica Intermediate | 209 | 34.93% | 65.07% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003067782 | T->C | INTERGENIC | None |