Detailed information of SNP:
|
SNP ID:
sf1003071815(Gbrowse)
Chromosome: chr10 Position: 3071815 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 54.37% | 45.63% |
| All Indica | 788 | 57.74% | 42.26% |
| All Japonica | 497 | 41.25% | 58.75% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 367 | 48.77% | 51.23% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 208 | 62.02% | 37.98% |
| Temperate Japonica | 335 | 54.63% | 45.37% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003071815 | T->C | INTERGENIC | None |