Detailed information of SNP:
|
SNP ID:
sf1003085492(Gbrowse)
Chromosome: chr10 Position: 3085492 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 51.33% | 48.67% |
| All Indica | 779 | 57.12% | 42.88% |
| All Japonica | 488 | 38.11% | 61.89% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 364 | 48.90% | 51.10% |
| Indica II | 210 | 67.62% | 32.38% |
| Indica Intermediate | 205 | 60.98% | 39.02% |
| Temperate Japonica | 328 | 51.52% | 48.48% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 66 | 21.21% | 78.79% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003085492 | A->T | INTERGENIC | None |