Detailed information of SNP:
|
SNP ID:
sf1003086312(Gbrowse)
Chromosome: chr10 Position: 3086312 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.26% | 44.74% |
| All Indica | 797 | 48.31% | 51.69% |
| All Japonica | 497 | 59.36% | 40.64% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 49.87% | 50.13% |
| Indica II | 213 | 53.05% | 46.95% |
| Indica Intermediate | 211 | 40.76% | 59.24% |
| Temperate Japonica | 335 | 45.07% | 54.93% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003086312 | A->G | INTERGENIC | None |