Detailed information of SNP:
|
SNP ID:
sf1003088192(Gbrowse)
Chromosome: chr10 Position: 3088192 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 67.25% | 32.75% |
| All Indica | 798 | 76.44% | 23.56% |
| All Japonica | 497 | 58.75% | 41.25% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 85.83% | 14.17% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 45.07% | 54.93% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003088192 | C->A | INTERGENIC | None |