Detailed information of SNP:
|
SNP ID:
sf1003089842(Gbrowse)
Chromosome: chr10 Position: 3089842 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 71.73% | 28.27% |
| All Indica | 797 | 51.69% | 48.31% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 54.69% | 45.31% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 211 | 42.65% | 57.35% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003089842 | G->T | LOC_Os10g06090(LOC_Os10g06090.1) | Synonymous |