Detailed information of SNP:



SNP ID: sf1003089842(Gbrowse)

Chromosome: chr10

Position: 3089842
Major allele: G

Minor allele: T

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1415 71.73% 28.27%
All Indica797 51.69% 48.31%
All Japonica495 99.19% 0.81%
Aus67 100.00% 0.00%
Indica I373 54.69% 45.31%
Indica II213 55.40% 44.60%
Indica Intermediate211 42.65% 57.35%
Temperate Japonica333 99.10% 0.90%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 73.81% 26.19%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1003089842 G->T LOC_Os10g06090(LOC_Os10g06090.1) Synonymous