Detailed information of SNP:
|
SNP ID:
sf1003092079(Gbrowse)
Chromosome: chr10 Position: 3092079 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 65.51% | 34.49% |
| All Indica | 798 | 76.57% | 23.43% |
| All Japonica | 497 | 57.95% | 42.05% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 86.10% | 13.90% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 45.07% | 54.93% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003092079 | G->A | LOC_Os10g06090(LOC_Os10g06090.1) | INTRON |