Detailed information of SNP:
|
SNP ID:
sf1003094959(Gbrowse)
Chromosome: chr10 Position: 3094959 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 50.28% | 49.72% |
| All Indica | 799 | 50.56% | 49.44% |
| All Japonica | 495 | 58.38% | 41.62% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 55.73% | 44.27% |
| Indica II | 213 | 41.31% | 58.69% |
| Indica Intermediate | 211 | 50.71% | 49.29% |
| Temperate Japonica | 335 | 45.07% | 54.93% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003094959 | T->C | LOC_Os10g06090(LOC_Os10g06090.1) | INTRON |