Detailed information of SNP:
|
SNP ID:
sf1003095722(Gbrowse)
Chromosome: chr10 Position: 3095722 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 56.47% | 43.53% |
| All Indica | 797 | 61.10% | 38.90% |
| All Japonica | 497 | 41.85% | 58.15% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 52.94% | 47.06% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 210 | 65.24% | 34.76% |
| Temperate Japonica | 335 | 54.93% | 45.07% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003095722 | T->C | LOC_Os10g06090(LOC_Os10g06090.1) | Non-Synonymous SNP |