Detailed information of SNP:



SNP ID: sf1003096781(Gbrowse)

Chromosome: chr10

Position: 3096781
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1416 66.03% 33.97%
All Indica797 77.04% 22.96%
All Japonica497 58.55% 41.45%
Aus67 5.97% 94.03%
Indica I375 86.40% 13.60%
Indica II212 60.85% 39.15%
Indica Intermediate210 76.67% 23.33%
Temperate Japonica335 45.37% 54.63%
Tropical Japonica94 93.62% 6.38%
Japonica Intermediate68 75.00% 25.00%
Group VI/Aromatic14 0.00% 100.00%
Intermediate41 63.41% 36.59%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1003096781 A->G INTERGENIC None