Detailed information of SNP:
|
SNP ID:
sf1003096781(Gbrowse)
Chromosome: chr10 Position: 3096781 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 66.03% | 33.97% |
| All Indica | 797 | 77.04% | 22.96% |
| All Japonica | 497 | 58.55% | 41.45% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 212 | 60.85% | 39.15% |
| Indica Intermediate | 210 | 76.67% | 23.33% |
| Temperate Japonica | 335 | 45.37% | 54.63% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003096781 | A->G | INTERGENIC | None |