Detailed information of SNP:
|
SNP ID:
sf1003099685(Gbrowse)
Chromosome: chr10 Position: 3099685 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 73.87% | 26.13% |
| All Indica | 795 | 59.62% | 40.38% |
| All Japonica | 495 | 92.12% | 7.88% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 374 | 50.00% | 50.00% |
| Indica II | 212 | 72.17% | 27.83% |
| Indica Intermediate | 209 | 64.11% | 35.89% |
| Temperate Japonica | 334 | 89.82% | 10.18% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003099685 | C->T | INTERGENIC | None |