Detailed information of SNP:
|
SNP ID:
sf1003100339(Gbrowse)
Chromosome: chr10 Position: 3100339 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 74.26% | 25.74% |
| All Indica | 796 | 60.05% | 39.95% |
| All Japonica | 496 | 92.34% | 7.66% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 51.07% | 48.93% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 209 | 63.64% | 36.36% |
| Temperate Japonica | 335 | 90.15% | 9.85% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003100339 | T->C | INTERGENIC | None |