Detailed information of SNP:
|
SNP ID:
sf1003106585(Gbrowse)
Chromosome: chr10 Position: 3106585 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 86.60% | 13.40% |
| All Indica | 731 | 82.63% | 17.37% |
| All Japonica | 492 | 97.97% | 2.03% |
| Aus | 61 | 45.90% | 54.10% |
| Indica I | 345 | 79.71% | 20.29% |
| Indica II | 198 | 87.88% | 12.12% |
| Indica Intermediate | 188 | 82.45% | 17.55% |
| Temperate Japonica | 332 | 98.80% | 1.20% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003106585 | A->T | INTERGENIC | None |