Detailed information of SNP:
|
SNP ID:
sf1003112840(Gbrowse)
Chromosome: chr10 Position: 3112840 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 65.84% | 34.16% |
| All Indica | 798 | 76.57% | 23.43% |
| All Japonica | 497 | 58.55% | 41.45% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 86.63% | 13.37% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 45.37% | 54.63% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003112840 | A->T | LOC_Os10g06130(LOC_Os10g06130.2) | UTR_3_PRIME |
| sf1003112840 | A->T | LOC_Os10g06130(LOC_Os10g06130.3) | UTR_3_PRIME |
| sf1003112840 | A->T | LOC_Os10g06130(LOC_Os10g06130.4) | UTR_3_PRIME |
| sf1003112840 | A->T | LOC_Os10g06130(LOC_Os10g06130.5) | UTR_3_PRIME |
| sf1003112840 | A->T | LOC_Os10g06130(LOC_Os10g06130.1) | UTR_3_PRIME |