Detailed information of SNP:
|
SNP ID:
sf1003114819(Gbrowse)
Chromosome: chr10 Position: 3114819 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 65.84% | 34.16% |
| All Indica | 799 | 76.85% | 23.15% |
| All Japonica | 496 | 58.27% | 41.73% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 86.13% | 13.87% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 45.07% | 54.93% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003114819 | G->A | LOC_Os10g06130(LOC_Os10g06130.2) | INTRON |
| sf1003114819 | G->A | LOC_Os10g06130(LOC_Os10g06130.3) | UTR_3_PRIME |
| sf1003114819 | G->A | LOC_Os10g06130(LOC_Os10g06130.4) | UTR_3_PRIME |
| sf1003114819 | G->A | LOC_Os10g06130(LOC_Os10g06130.5) | UTR_3_PRIME |
| sf1003114819 | G->A | LOC_Os10g06130(LOC_Os10g06130.1) | INTRON |