Detailed information of SNP:
|
SNP ID:
sf1003123945(Gbrowse)
Chromosome: chr10 Position: 3123945 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 77.48% | 22.52% |
| All Indica | 796 | 61.56% | 38.44% |
| All Japonica | 493 | 98.58% | 1.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 52.41% | 47.59% |
| Indica II | 211 | 72.51% | 27.49% |
| Indica Intermediate | 211 | 66.82% | 33.18% |
| Temperate Japonica | 332 | 98.19% | 1.81% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003123945 | G->A | LOC_Os10g06140(LOC_Os10g06140.1) | INTRON |