Detailed information of SNP:
|
SNP ID:
sf1003130203(Gbrowse)
Chromosome: chr10 Position: 3130203 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 69.82% | 30.18% |
| All Indica | 798 | 50.38% | 49.62% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 52.27% | 47.73% |
| Indica II | 212 | 55.19% | 44.81% |
| Indica Intermediate | 211 | 42.18% | 57.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003130203 | G->A | INTERGENIC | None |