Detailed information of SNP:
|
SNP ID:
sf1003131188(Gbrowse)
Chromosome: chr10 Position: 3131188 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 69.26% | 30.74% |
| All Indica | 795 | 49.31% | 50.69% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 50.80% | 49.20% |
| Indica II | 212 | 54.72% | 45.28% |
| Indica Intermediate | 209 | 41.15% | 58.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003131188 | C->T | INTERGENIC | None |