Detailed information of SNP:
|
SNP ID:
sf1003145547(Gbrowse)
Chromosome: chr10 Position: 3145547 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 79.04% | 20.96% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 491 | 44.20% | 55.80% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 331 | 56.50% | 43.50% |
| Tropical Japonica | 93 | 11.83% | 88.17% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003145547 | G->A | INTERGENIC | None |