Detailed information of SNP:
|
SNP ID:
sf1003174087(Gbrowse)
Chromosome: chr10 Position: 3174087 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1291 | 89.31% | 10.69% |
| All Indica | 796 | 98.62% | 1.38% |
| All Japonica | 374 | 68.98% | 31.02% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 249 | 85.94% | 14.06% |
| Tropical Japonica | 74 | 16.22% | 83.78% |
| Japonica Intermediate | 51 | 62.75% | 37.25% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003174087 | A->G | INTERGENIC | None |