Detailed information of SNP:
|
SNP ID:
sf1003177506(Gbrowse)
Chromosome: chr10 Position: 3177506 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 78.26% | 21.74% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 497 | 41.85% | 58.15% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 54.63% | 45.37% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1003177506 | T->G | LOC_Os10g06200(LOC_Os10g06200.1) | INTRON |